Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs34921812 chr10:27582062 T/C 0 127 42.18 45.83 18.85 KM Plot
TGCT rs34983424 chr10:27562763 C/G 6.98E-7 132 42.18 46.3 20.6 KM Plot
TGCT rs35000415 chr7:128585616 C/T 2.01E-5 132 45.1 30.3 17.1 KM Plot
TGCT rs35023245 chr7:128633243 GT/G 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs35053986 chr10:27579381 G/A 2.72E-12 128 42.18 45.83 20.6 KM Plot
TGCT rs35065646 chr12:129291767 GA/G 1.39E-5 134 41.33 44.28 29.53 KM Plot
TGCT rs35069256 chr7:128669912 T/TA 1.75E-5 133 43.68 30.3 17.1 KM Plot
TGCT rs35091912 chr3:172507788 AT/A 8.65E-5 128 42.1 37.53 47.38 KM Plot
TGCT rs35144535 chr7:128721777 A/G 1.67E-5 134 42.27 31.17 17.1 KM Plot
TGCT rs35161927 chr2:3486174 CT/C 2.43E-5 131 39.38 74.47 25.32 KM Plot
TGCT rs35188261 chr7:128683539 G/A 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs35197130 chr4:47444818 G/A 0.00014 132 45.83 36.1 51.6 KM Plot
TGCT rs35234849 chr7:128648953 T/C 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs35243976 chr3:172547079 G/C 7.57E-6 134 42.03 46.3 25.8 KM Plot
TGCT rs35274937 chr8:103089669 GA/G 0.000113 132 42.27 36.1 48.45 KM Plot